You say that he then immediately removes the bombs from their bodies with zero issue despite their "power". Heck his wording from the clip I found is simply "It is beyond my power" Without any further explanation.
So he can freely warp things out of there bodies but can warp them back into humans? Even knowing what we know from later in the series they're mostly human?
I'm honestly not sure what these SB-tier attempts at trying to rewrite what people can clearly see are, but it's clearly obvious it's that.
The Dragon has always been shown to be ineffective in straight up erasing people from existence or even leading them into a calamity but can still effect them in beneficial ways. This was known since King Piccolo was able to regain his youth from the Dragon and was then consequently able to destroy it.
Vegeta and Nappa couldn't be affected by it in any fashion despite them being flown in pods which should be affected by the Dragon's wish but isn't. Characters can be raised by to life or fully restored Ki wise but they cannot have their bodies affected by the Dragon(How many people miss that the Cyborgs are not machine based but are biomechanical? Vegeta's taunts aren't meant to be correct, he only fought 19 who was a robot with a human brain) but only have the destructive part of their body removed(Which fits in line with wishes being able to benefit still working).
And it's pretty clear that they wouldn't work against Zen'O erasing something and only the Super Dragonball can do that. It's funny you are trying to make something pretty basic so complicated.